Question: How to set coverage or cut-off on GenomeTester4/Glistcompare
gravatar for ram.mainali
2.2 years ago by
ram.mainali10 wrote:

I produced list of kmers from WGS data which have coverage above a certain threshold or cut-off by using GenomeTester4 glistcompare. The command is: GenomeTester4/bin/glistcompare inputfile.list inputfile.list -i -c 15 -o output

Besides setting coverage above a certain threshold (cut-off), here in this case 15, I would like to set maximum coverage or cut-off for example 40 so that I will have list of k-mers with coverage 15 to 40. Could you please suggest me what I should do in this regard. Thank you

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