I I have an RNA-seq data and trying to load the sorted.bam files to the IGV. when it is loaded some of the genes can not be seen meaning for instance when I check for GAPDH there are a lot of reads there and I can check different parts of that but there are some genes that no read is mapped to them and it shows nothing. I made bam files and loaded them on UCSC. then I could check those genes as well as GAPDH. do you know why I can not check some of the genes on IGV but I can do that on UCSC? how can I solve the problem on IGV? BTW, I am checking some mutations.
Question: IGV vs UCSC and comparison
2.7 years ago by
Sara • 90
Sara • 90 wrote:
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