I have a .ped file generated using SNP chip .idat data processed using the GenomeStudio GT module. The genotypes are coded using allele values of 1, 2 , 3 or 4. Is there a away to convert these to the base call ie. A, C, G or T? I assume each number corresponds to a base call, but am unsure of how they match up.
Question: Converting numeric to alphanumeric allele codes
2.8 years ago by
emyli • 10
emyli • 10 wrote:
ADD COMMENT • link •
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 1450 users visited in the last hour