Question: (Closed) How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?
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gravatar for hodatn
23 months ago by
hodatn0
hodatn0 wrote:

How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?( For plants)

target rna-seq tf • 996 views
ADD COMMENTlink modified 23 months ago by Jake Warner750 • written 23 months ago by hodatn0
1

If your question fits in one sentence you probably didn't provide sufficient information for us to answer your question. Please elaborate.

ADD REPLYlink written 23 months ago by WouterDeCoster40k
1

You coul go for a co-expression network with your RNA-seq data matrix and use Genie3 which can handle a list of known TF(s) and find for them their potential targets. https://bioconductor.org/packages/devel/bioc/html/GENIE3.html

ADD REPLYlink written 23 months ago by lessismore690

Hello hodatn!

We believe that this post does not fit the main topic of this site.

Please don't post your question twice: Finding target genes of a TF . Instead provide sufficient context and attend your old question.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 23 months ago • written 23 months ago by Michael Dondrup46k
1
gravatar for Jake Warner
23 months ago by
Jake Warner750
Jake Warner750 wrote:

Make a mutant of your TF then sequence the mutants.

ADD COMMENTlink modified 23 months ago • written 23 months ago by Jake Warner750
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