Hello,
I am trying to use VirusClip for one of my projects. However, I am not sure what exactly we are supposed to provide in the following part of the virus_clip.sh script:
"resources"
refFasta=/path/to/hbv_ref/hbv.fa
blastdb=/pathool01/disk1/software/ref/hg19
annovardb=/pathool01/disk1/data/danielho/ireneng/ANNOVAR/annovar/humandb
If anyone has used virusclip before:
- can someone help me with this issue.
- also, how long did it take if you have used Virusclip before.
Any help will be greatly appreciated. Thank you!
Thank you. I did not understand annovardb. what exactly that database is?