Question: non-coding RNAs target predictions
2
gravatar for Leite
2.7 years ago by
Leite1000
São Paulo - Brazil - Unifesp
Leite1000 wrote:

Hello everyone,

I have a list with some non-coding RNAs related with one disease, so I would to look for interactions between this ncRNAs and mRNA. Well, to miRNA I found a lot of databases for target predictions, but for others ncRNA I cant found.

My list is composed for:

Long intergenic non-protein coding RNAs (LincRNA) = 11 Non-coding RNAs (ncRNA) = 7 Small nucleolar RNAs (snoRNA) = 2

Anyone know a database or a way to predict targes for this ncRNAs?

Best regards,

mirna ncrna target prediction • 1.6k views
ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 2.7 years ago by Leite1000

Are you certain about the mechanism being direct interactions with mRNAs?

ADD REPLYlink written 2.7 years ago by Asaf8.1k

Dear @Asaf

Yes, I'm certain about the miRNAs but not about the others ncRNAS, this can interact with others genetics elements?

There is one tool to do that?

Best regards,

ADD REPLYlink written 2.7 years ago by Leite1000
1
gravatar for lsp03yjh
19 months ago by
lsp03yjh800
China
lsp03yjh800 wrote:

You may use lncRNA-target interactions ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small ncRNA-target interactions ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.

ADD COMMENTlink written 19 months ago by lsp03yjh800
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