Question: Why does my genome annotation file contain only one type of feature? (i.e. mol_type=genomic DNA)
0
gravatar for molly77
14 months ago by
molly7710
molly7710 wrote:

Hi,

I have a gff file of a genome that I obtained from NCBI. The gff file and corresponding genome fasta come from a recently published paper in Nature. However, the gff file only contains one type of feature, i.e. "genomic DNA". I don't receive any hits when I grep for gene or CDS etc. Why would the gff file only contain one feature?

My goal was to extract all CDS from the protein-coding genes in the genome fasta with the help of the gff file, but how am I suppose to do this if my gff file doesn't even contain the coordinates I need for CDS? Can someone elaborate, I am confused.

Thank you!

gff annotation genome • 503 views
ADD COMMENTlink modified 14 months ago • written 14 months ago by molly7710

I have a gff file of a genome that I obtained from NCBI

how about showing us the URL of that gff file ?

ADD REPLYlink written 14 months ago by Pierre Lindenbaum115k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1446 users visited in the last hour