Question

Stringtie and Cufflinks and Cuffmerge

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6.5 years ago

qudrat ▴ 100

Can Cuffmerge be used to merge different gtf files produced from Stringtie as I have fourteen gtf files from Stringtie

RNA-Seq Assembly • 3.0k views

ADD COMMENT • link updated 6.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k • written 6.5 years ago by qudrat ▴ 100

score 1 · Answer 1 · 2017-10-10

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6.5 years ago

Kristoffer Vitting-Seerup ★ 4.0k

Yep. But if you look at the figures on https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual you seen they suggest to use stringtie -merge.

ADD COMMENT • link 6.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k