How to analyze multiple codeml output files to find out positive gene clusters?
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6.5 years ago
ThulasiS ▴ 90

Hi all,

After long struggle with codeml, finally I was able get the codeml results for my orthologues of interest. Now the major problem ahead of me is to analyze the codeml output and get the positively selected genes list. How can I achieve that, I am not getting any idea. I found some python scripts to calculate LRT variations but not much useful. Please help me to sort this thing.

Thank you

codeml python perl • 1.3k views
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