Hi everybody!
I have a question and I need your opinion! To carry out RNA-seq analysis, I'm working with htseq-count (python) for a while. Then, I run DESeq2 in R to carry out downstream analysis. But I have been reading for a long time the benefits of using salmon instead of htseq-count. Which one do you think is better for DESeq2 analysis?
Many thanks!
Thank you for this fantastic answer, very informative!