Question: Map list of proteins to goslim_chembl
gravatar for SteffenJaensch
3.3 years ago by
SteffenJaensch0 wrote:


I'm trying to map lists of proteins to GO slim chembl terms ( In QuickGO ( one can list all gene associations to a selected GO slim, resulting in 394,897,572 associations in the case of goslim_chembl. I could use these annotations to look up my proteins and extract the GO terms, however one can only download up to 50000 annotations.

Does anybody know how to obtain a (GAF) file with all goslim_chembl annotations? Or another way to do the mapping? I have hundreds of lists of proteins, so I need to do it programmatically, not by manually entering protein lists in a user interface.

Many thanks!

go slim • 856 views
ADD COMMENTlink modified 2.9 years ago by Biostar ♦♦ 20 • written 3.3 years ago by SteffenJaensch0
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