Question: Where to find a list of rat protein coding genes?
0
gravatar for chahatupretiiitk
9 weeks ago by
United States
chahatupretiiitk40 wrote:

I have a list of rat genes and I wanted to filter out the protein coding genes from that (It also has antisense RNA, lnc RNA, snRNA... etc.). So for that I needed a list of all protein coding genes in rat. Where can I get this list?

I do know that for human and mouse, it can be obtained from GenCode, but it does not have files for rat.

Any help would be great!

gene-list rat genome • 168 views
ADD COMMENTlink written 9 weeks ago by chahatupretiiitk40
2
gravatar for genomax
9 weeks ago by
genomax39k
United States
genomax39k wrote:

Use BioMart from Ensembl. Ensembl Genes --> Rat Genes --> Filter for the type of genes you need under Filters --> Genes --> Gene Types.

ADD COMMENTlink written 9 weeks ago by genomax39k

Thank you so much, Biomart is awesome! And so is Biostars!

ADD REPLYlink written 9 weeks ago by chahatupretiiitk40
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