Question: Converting TCGA/GDC IDs
0
gravatar for krc3004
9 weeks ago by
krc30040
krc30040 wrote:

Hi all,

I'm using GDC to bulk download RNA-seq data from TCGA. I'm able to download data just fine, but the filenames are the UUIDs, as shown below:

https://portal.gdc.cancer.gov/files/c85a6f34-7b6b-4677-beac-44f06bcc5c32

What I really want are the Entity IDs, also in the above link. Is there a way to convert from one to the other in bulk? Seems like it should be simple but I couldn't find a way to do this on the GDC data model pages: https://gdc.cancer.gov/developers/gdc-data-model and https://docs.gdc.cancer.gov/API/Users_Guide/Search_and_Retrieval/

Thanks very much for your help!

rna-seq gdc tcga • 212 views
ADD COMMENTlink written 9 weeks ago by krc30040

See: TCGA UUIDS to TCGA barcode (SampleID) in R

ADD REPLYlink written 9 weeks ago by genomax39k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1370 users visited in the last hour