position frequency/weight matrices
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6.5 years ago

Hello all,

Could anyone suggest where to download PFMs or PWMs only for plants with the exception of JASPAR (I already have the JASPAR)!? I am gonna scan 1-kb regions of more than 27K genes (Arabidopsis) for the presence of motifs.

I would be so appreciated if anyone can help me. Thanks in advance!
transcription factors position weight matrix • 1.2k views
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Motif scanning might turn out to be less powerful than you expected.

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