Question: How does RSEM allocate ChIPseq signals to genes?
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4 months ago by
moushengxu300 wrote:

For RNAseqs, allocating the read seqs to genes is straightforward and easy: within the gene region or not.

How about ChIPseqs? For instance, if you are mapping Pol2 signals to genes, and you care about +-5k TSS regions, can you tell RSEM to do such an association? Even more complicated, if you want to bin the +-5k region into partitions, how can do do so?


chip-seq next-gen assembly gene • 164 views
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