Entering edit mode
6.5 years ago
moxu
▴
510
For RNAseqs, allocating the read seqs to genes is straightforward and easy: within the gene region or not.
How about ChIPseqs? For instance, if you are mapping Pol2 signals to genes, and you care about +-5k TSS regions, can you tell RSEM to do such an association? Even more complicated, if you want to bin the +-5k region into partitions, how can do do so?
Thanks.