Question: (Closed) Non model organism(species) like planaria RNA SEQ analysis especially Gene ontology analysis
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gravatar for hyojin0912
5 weeks ago by
hyojin09120
hyojin09120 wrote:

Hi

I'm analyzing planaria RNA seq for regeneration study

But planaria genome is not well organized(Use SmedGD v3.1 fasta & GTF)

So I do blastx to get uniprotID but I'm having over 2,000 species' uniprot ID

Also, I have an assigned GO to each gene then I want to analyze at GO level

Is there any tool or paper which I can see...

Last time, I done GO enrichment test using EASE test (DAVID software) but I don't have enough number of GO to each gene.. this is also a problem of my analysis

Please help me anything

I'm looking forward to your reply

Thanks

rna-seq tool • 136 views
ADD COMMENTlink modified 5 weeks ago by Asaf4.6k • written 5 weeks ago by hyojin09120

Hello hyojin0912!

Questions similar to yours can already be found at:

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Cheers!

ADD REPLYlink written 4 weeks ago by Michael Dondrup43k
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