Question: (Closed) Non model organism(species) like planaria RNA SEQ analysis especially Gene ontology analysis
gravatar for hyojin0912
8 months ago by
hyojin09120 wrote:


I'm analyzing planaria RNA seq for regeneration study

But planaria genome is not well organized(Use SmedGD v3.1 fasta & GTF)

So I do blastx to get uniprotID but I'm having over 2,000 species' uniprot ID

Also, I have an assigned GO to each gene then I want to analyze at GO level

Is there any tool or paper which I can see...

Last time, I done GO enrichment test using EASE test (DAVID software) but I don't have enough number of GO to each gene.. this is also a problem of my analysis

Please help me anything

I'm looking forward to your reply


rna-seq tool • 351 views
ADD COMMENTlink modified 8 months ago by Asaf4.8k • written 8 months ago by hyojin09120

Hello hyojin0912!

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ADD REPLYlink written 8 months ago by Michael Dondrup44k
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