I'm analyzing planaria RNA seq for regeneration study
But planaria genome is not well organized(Use SmedGD v3.1 fasta & GTF)
So I do blastx to get uniprotID but I'm having over 2,000 species' uniprot ID
Also, I have an assigned GO to each gene then I want to analyze at GO level
Is there any tool or paper which I can see...
Last time, I done GO enrichment test using EASE test (DAVID software) but I don't have enough number of GO to each gene.. this is also a problem of my analysis
Please help me anything
I'm looking forward to your reply