Question: How to predict the targets of Long noncoding RNA
0
gravatar for lijinlinwhu
16 months ago by
lijinlinwhu0 wrote:

I identified a new long noncoding RNA and want to know its function. First i would like to predict the targets of the LncRNA. Does anyone know some good approaches to do that. Thank you very much

gene • 792 views
ADD COMMENTlink modified 16 months ago • written 16 months ago by lijinlinwhu0

If you have large sample size, you could find co-expressed genes.

ADD REPLYlink written 16 months ago by geek_y9.1k

Unfortunatly the only other option is to knock it down/out and compare before/after with a method like RNAseq.

ADD REPLYlink written 16 months ago by kristoffer.vittingseerup1.4k
0
gravatar for lijinlinwhu
16 months ago by
lijinlinwhu0 wrote:

Thank you @geek_y and @kristoffer.vittingseerup. I am wondering whether there are some methods( software or online service), like predicting the targets of miRNAs, to predict the possible targets that long non coding RNA could interact with.

ADD COMMENTlink modified 16 months ago • written 16 months ago by lijinlinwhu0
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