Question: where to find e coli ASM584v1 annotation file
gravatar for --panda--
16 months ago by
--panda--30 wrote:

I need to check someone's study on e coli which use the ASM584v1 annotation. It's easy to find the latest version on NCBI which is ASM584v2 but I can not get the link to download the old version gff annotation file on Assembly. Any idea where can I get it?

sequencing genome • 685 views
ADD COMMENTlink modified 16 months ago by Kevin Blighe37k • written 16 months ago by --panda--30
gravatar for Kevin Blighe
16 months ago by
Kevin Blighe37k
Republic of Ireland
Kevin Blighe37k wrote:

You can download the genomic sequence from here (I just did):

However, luckily, you can download both the genomic sequence and matched GTF reference from Ensembl. It took a while for me to search the FTP site but I got it in the end. The last Ensembl version to include ASM584v1 appears to have been Ensembl release 21:

ADD COMMENTlink written 16 months ago by Kevin Blighe37k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2152 users visited in the last hour