Question: where to find e coli ASM584v1 annotation file
0
gravatar for --panda--
13 months ago by
--panda--30
Evanston
--panda--30 wrote:

I need to check someone's study on e coli which use the ASM584v1 annotation. It's easy to find the latest version on NCBI which is ASM584v2 but I can not get the link to download the old version gff annotation file on Assembly. Any idea where can I get it?

sequencing genome • 594 views
ADD COMMENTlink modified 13 months ago by Kevin Blighe33k • written 13 months ago by --panda--30
2
gravatar for Kevin Blighe
13 months ago by
Kevin Blighe33k
Republic of Ireland
Kevin Blighe33k wrote:

You can download the genomic sequence from here (I just did): http://ecogene.org/ecodownload/sequence

However, luckily, you can download both the genomic sequence and matched GTF reference from Ensembl. It took a while for me to search the FTP site but I got it in the end. The last Ensembl version to include ASM584v1 appears to have been Ensembl release 21:

ADD COMMENTlink written 13 months ago by Kevin Blighe33k
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