where to find e coli ASM584v1 annotation file

Question

[--panda--]

I need to check someone's study on e coli which use the ASM584v1 annotation. It's easy to find the latest version on NCBI which is ASM584v2 but I can not get the link to download the old version gff annotation file on Assembly. Any idea where can I get it?

Answer 1

[Kevin Blighe]

You can download the genomic sequence from here (I just did): http://ecogene.org/ecodownload/sequence

However, luckily, you can download both the genomic sequence and matched GTF reference from Ensembl. It took a while for me to search the FTP site but I got it in the end. The last Ensembl version to include ASM584v1 appears to have been Ensembl release 21:

• Genomic sequence
• GTF