I am looking for the best available differential expression analysis tool for single cell RNA-seq data.
From the literatures that did some comparisons, I found that MAST, ROTS, SCDE, DEGseq, D3E, and SAMseq seem to have good performance. Which one would you recommend based on your actual experience (most accurate, reliable, and stable tool)?
I’d greatly appreciate your advice.
Thank you very much!