How to get metthylKit(or SMART2) input file ?
0
0
Entering edit mode
4.3 years ago
wangzer • 0

I use Bismark to align and methylation_extractor´╝î then i get the result file--*.deduplicated.sorted.sam

And how do I get the metthylKit(or SMART2) input file like this:

chrBase chr base strand coverage freqC freqT

chr21.9764539 chr21 9764539 R 12 25.00 75.00 chr21.9764513 chr21 9764513 R 12 0.00 100.00 chr21.9820622 chr21 9820622 F 13 0.00 100.00 chr21.9837545 chr21 9837545 F 11 0.00 100.00 chr21.9849022 chr21 9849022 F 124 72.58 27.42

DMR DNA methylation methylkit Bismark • 1.6k views
ADD COMMENT

Login before adding your answer.

Traffic: 1786 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6