I would like to get a list of all domains of all proteins in my list.
Browsing STRING, I noticed from the the domain structures (displays images from SMART database) that there are a lot of GEF-domians, but I cannot batch extract or batch search. I found no batch search on SMART or PFAM.
I could not find an easy tool. To find this in uniprot, or pfam, it seems that I need to search one by one.
Thanks for suggestions!
An example list:
Fopnl AI597479 Ccnb1ip1 Arhgap17 Prmt7 Fbxo11 Plekhg2 Ric1 Trub1 Rfc4 Ric8a n.R5.8s1 Fbxo6 Med23 Nol4l Rbsn Dis3 Ddx23 Mtrf1l
I guess downloading PFAM could work. Question is then how to extract a "ID -> domain annotations" from the full database.