Loading a genome in BSgenome
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4.0 years ago
deepti1rao ▴ 40

Is it possible to load a genome assembled by me (sequence not submitted to any database yet) in the BSgenome package for further study? How?

BSgenome Bioconductor genome assembly • 1.3k views
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4.0 years ago
josev.die ▴ 50

Same question here. Please, let us know if you figure out how to do it.

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I have the same problem, in this case, we need to forge a custom BSgenome (https://www.bioconductor.org/packages/devel/bioc/vignettes/BSgenome/inst/doc/BSgenomeForge.pdf).

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Hi. You are right. We followed that vignette to forge our custom genomes :

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