Is it possible to load a genome assembled by me (sequence not submitted to any database yet) in the BSgenome package for further study? How?
Same question here. Please, let us know if you figure out how to do it.
I have the same problem, in this case, we need to forge a custom BSgenome (https://www.bioconductor.org/packages/devel/bioc/vignettes/BSgenome/inst/doc/BSgenomeForge.pdf).
You are right. We followed that vignette to forge our custom genomes :
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