Question: Generating a tree (nex or nwk file) starting from msa
gravatar for lessismore
21 months ago by
lessismore640 wrote:

Hey all,

i need to generate a tree file (nexus or newick preferably) with bootstrap values embedded. my idea is to export then the file and to nicely plot it with iTOL.

Could you suggest a platform/webtool when i can generate my tree

- starting from a msa file
- using jukes-cantor as genetic distance model
- using neighbor-joining method
- possibility of selecting an outgroup
- bootstrap replicate 500
- generating consensus tree

thanks in advance

msa newick tree nexus • 668 views
ADD COMMENTlink modified 21 months ago by Jean-Karim Heriche19k • written 21 months ago by lessismore640
gravatar for Jean-Karim Heriche
21 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche19k wrote:

Have a look at the R packages ape and phangorn.

ADD COMMENTlink written 21 months ago by Jean-Karim Heriche19k
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