Generating a tree (nex or nwk file) starting from msa
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Entering edit mode
3.5 years ago
lessismore ★ 1.1k

Hey all,

i need to generate a tree file (nexus or newick preferably) with bootstrap values embedded. my idea is to export then the file and to nicely plot it with iTOL.

Could you suggest a platform/webtool when i can generate my tree

- starting from a msa file
- using jukes-cantor as genetic distance model
- using neighbor-joining method
- possibility of selecting an outgroup
- bootstrap replicate 500
- generating consensus tree

thanks in advance

tree msa nexus newick • 1.2k views
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Entering edit mode
3.5 years ago

Have a look at the R packages ape and phangorn.

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