convert Ensemble format wig to UCSC format

Question

[ta_awwad]

Hello everybody, I generated wig files using ensemble ref genome and I would like to convert it to UCSC wig format. this means I have to change the chromosome names and remove the extra chromosomes (GL and JH) from ensemble assembly is there any way to do this?

thanks much Tamer

[Pierre Lindenbaum]

what is the output of

grep Step your.wig | tr " \t" "\n" | grep 'chrom=' | sort | uniq

?

[ta_awwad]

chrom=1
chrom=10
chrom=11
chrom=12
chrom=13
chrom=14
chrom=15
chrom=16
chrom=17
chrom=18
chrom=19
chrom=2
chrom=3
chrom=4
chrom=5
chrom=6
chrom=7
chrom=8
chrom=9
chrom=GL456211.1
chrom=GL456212.1
chrom=GL456213.1
chrom=GL456216.1
chrom=GL456219.1
chrom=GL456221.1
chrom=GL456233.1
chrom=GL456350.1
chrom=GL456359.1
chrom=GL456366.1
chrom=GL456370.1
chrom=GL456378.1
chrom=GL456379.1
chrom=GL456382.1
chrom=GL456389.1
chrom=JH584293.1
chrom=JH584294.1
chrom=JH584295.1
chrom=JH584296.1
chrom=JH584297.1
chrom=JH584299.1
chrom=JH584301.1
chrom=JH584304.1
chrom=MT
chrom=X
chrom=Y