Hello everyone,

I would appreciate some help with my data. I want to do Differential Expression profiling for miRNA samples.

Using the miRDeep2 program and algorithm, I'm in trouble when dealing with results to make a proper table in order to use it as input for DE software such as EdgeR or DEseq2.

**Which .csv should be used for read count?**

miRNAs_expressed_all_samples_15_09_2017_t_07_26_27.csv

or

miRNA_expressed.csv

Also, there are duplicate values in the miRNA_expressed.csv. **Should I consider the average or only one of them with highest value?**

miRNA read_count precursor

ssc-let-7a 66271 ssc-let-7a-1

ssc-let-7a 66388 ssc-let-7a-2

ssc-let-7c 22747 ssc-let-7c