After my ALL vs ALL parallelized job (on SLURM), I run OMA 2.1.1 with a single processor and I got this message on multiple lines:
Error, 'unable to ReadProgram(Cache/AllAll/isp1/sp2/part_397-877)' (and some other lines containing another pairwise from AllAll)
I deleted these files (i.e Cache/AllAll/isp1/sp2/part_397-877.gz), launched again the All vs All parallelized job and then OMA as a single processor. Now, I am getting this messages at the end of my job.out:
Reading the all-against-all files...
Process 21923 .... 12020: job nr 20 of 20
Job 20 [pid 21923]: waiting for too long. abort.
It seems that your parallelisation framework hasn't launched the master job properly, or you are using a very slow filesystem. Please restart a single process of OMA with the command line option "-c" to just convert the databases. Once this job successfully finished, you can restart OMA with many parallel jobs.
I do not know what to do at this point, should I run again the data conversion (-c)? If so, Do I need to run again the AllvsAll parallelized job?