Question

SAMtools installation on windows

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6.5 years ago

amy16 ▴ 40

How to install SAMtools on Windows 10? I have downloaded it though but unable to run it.

RNA-Seq samtools • 25k views

ADD COMMENT • link updated 6.5 years ago by Samarth Kulshrestha ▴ 280 • written 6.5 years ago by amy16 ▴ 40

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You can only install it under ubuntu bash shell in Win 10. Is that what you are referring to?

ADD REPLY • link 6.5 years ago by GenoMax 141k

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Oh !!! I wanted to use it on Windows and not on Linux.

ADD REPLY • link 6.5 years ago by amy16 ▴ 40

score 2 · Accepted Answer · 2017-11-02

Hi,

You might be interested in knowing that Windows 10 offers a new feature, A full, Ubuntu-based Bash shell that can run Linux software directly on Windows.

https://msdn.microsoft.com/en-us/commandline/wsl/about

https://www.howtogeek.com/265900/everything-you-can-do-with-windows-10s-new-bash-shell/

This will be helpful to you for your windows 10 based NGS analysis.

Best

score 1 · Accepted Answer · 2017-11-01

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6.5 years ago

mittu1602 ▴ 200

Refer to this post on BOW (Bioinformatics for winows)

ADD COMMENT • link 6.5 years ago by mittu1602 ▴ 200