17 months ago by
In iPathwayGuide, we have a feature that allows you to conduct a Meta-Analysis to identify overlapping DEGs across up to 5 separate datasets. The application is agnostic to the platform use to measure expression. I have customers that routinely compare mRNA to protein expression or RNA-Seq based expression to microarray. Not only will you see overlapping genes, but you can also identify common or uniqly perturbed pathways and the set of genes that are driving that change.
Unfortunately, this feature is a premium feature and normally requires payment. If you reach out to me and mention this post, I'd be happy to arrange a way for you to get some free reports. You can reach me by email: andrew "AT" advaitabio.com I've pasted a few images below. to give you a sense of what it can do for you.