Hi, Has anyone used the RIPSeeker package from Bioconductor? I am analyzing RNA Immunoprecipitation (RIP)-seq data. I cannot find any documents online with examples of the commands used for RIP-seq analysis. I only found the paper and a few documents defining the commands.
It would help greatly to actually see the commands being used for a RIPseq analysis.
I have triplicates for my pulldown as well as INPUT and IgG antibody libraries.
Thanks for any insight.