Location of motif

Question

[coolmsandhu]

Hi all,

I have found some simple sequence repeat (SSR) using BatchPrimer3 tools on some gene sequence of Rice. Now I want to find the location of these SSRs, where the repeat located on the coding or non-coding (UTR) region of gene sequences, I can do it using Rice genome browser for one gene at the time, but it's time-consuming for many genes. Could you please let me know how I can perform it for many genes?

Thanks in advance

[shenwei356]

Please provide some example data.