Question: WGCNA error r studio
0
gravatar for krushnach80
9 weeks ago by
krushnach80250
krushnach80250 wrote:

I m doing WGCNA analysis ,the moment i try to do TOMplot i get this error in my rstudio

Error: C stack usage 7971860 is too close to the limit

Im running the script on a machine with 128 gb ram ,why am i getting such error i thought there is plenty of memory .

any help or suggestion would be highly appreciated

R • 186 views
ADD COMMENTlink modified 3 days ago by Biostar ♦♦ 20 • written 9 weeks ago by krushnach80250

Have you tried googling "C stack usage is too close to the limit"? Gives plenty of hits.

ADD REPLYlink written 9 weeks ago by WouterDeCoster24k

i did there are plenty of links but no one gives a clear solution ..

ADD REPLYlink written 9 weeks ago by krushnach80250
1

I think that I reached this previously when doing partitioning around medoids (PAM) clustering. I think that it's a limit in the very architecture of R and not related to your available memory.

Have you tried running in parallel?

ADD REPLYlink written 2 days ago by Kevin Blighe11k

"Have you tried running in parallel?" yes kevin but still i get the same error I have like 56 cores in the machine and 128 gb of ram...

ADD REPLYlink written 2 days ago by krushnach80250

What about this? https://stackoverflow.com/a/14719448/6631639

ADD REPLYlink written 2 days ago by WouterDeCoster24k
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