Question: WGCNA error r studio
0
gravatar for krushnach80
13 months ago by
krushnach80440
krushnach80440 wrote:

I m doing WGCNA analysis ,the moment i try to do TOMplot i get this error in my rstudio

Error: C stack usage 7971860 is too close to the limit

Im running the script on a machine with 128 gb ram ,why am i getting such error i thought there is plenty of memory .

any help or suggestion would be highly appreciated

R • 533 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 13 months ago by krushnach80440

Have you tried googling "C stack usage is too close to the limit"? Gives plenty of hits.

ADD REPLYlink written 13 months ago by WouterDeCoster35k

i did there are plenty of links but no one gives a clear solution ..

ADD REPLYlink written 13 months ago by krushnach80440
1

I think that I reached this previously when doing partitioning around medoids (PAM) clustering. I think that it's a limit in the very architecture of R and not related to your available memory.

Have you tried running in parallel?

ADD REPLYlink written 11 months ago by Kevin Blighe33k

"Have you tried running in parallel?" yes kevin but still i get the same error I have like 56 cores in the machine and 128 gb of ram...

ADD REPLYlink written 11 months ago by krushnach80440

What about this? https://stackoverflow.com/a/14719448/6631639

ADD REPLYlink written 11 months ago by WouterDeCoster35k
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