Question: how to save hisat reads info to txt
0
gravatar for CL2017
13 days ago by
CL20170
CL20170 wrote:

At the end of hisat, the reads and percentage is usually print out directly. Does anyone know how to save this printout into a txt file?Thanks!

rna-seq • 159 views
ADD COMMENTlink modified 12 days ago • written 13 days ago by CL20170

Do you still use HISAT rather than the successor HISAT2, as recommended by the developers? If you use HISAT2, use the --summary-file option which will save the summary to a file.

ADD REPLYlink written 13 days ago by ATPoint2.5k

Thank you everyone. It works~

ADD REPLYlink written 12 days ago by CL20170
1
gravatar for cpad0112
13 days ago by
cpad01123.1k
cpad01123.1k wrote:

append &> hisat.log at the end of your command

ADD COMMENTlink written 13 days ago by cpad01123.1k
0
gravatar for genomax
13 days ago by
genomax37k
United States
genomax37k wrote:

You can redirect standard out (things printed to screen) and any errors to files. hisat your commands > hisat.log 2>error.log

ADD COMMENTlink modified 13 days ago • written 13 days ago by genomax37k
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