Question: Haplotype LD block without genotypes
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gravatar for alessandrotestori7
6 days ago by
alessandrotestori7250 wrote:

Hi. Is there a tool which can generate haplotype blocks (with plot, like Haploview) without genotype data? I only have a list of SNPs. Thanks!

ld haplotype gwas • 108 views
ADD COMMENTlink written 6 days ago by alessandrotestori7250

Given that LD is the non-random association of alleles at different loci, I would say: NO! However, if you are working in human and you have a list of SNPs, maybe you can browse the 1000 genome data and see if they share haplotype blocks data (I think they do, but I do not know where).

ADD REPLYlink written 6 days ago by Fabio Marroni1.5k
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