Hello everyone, I tried to use 'xtract' for converting a xml file of taxonomy data, but i got:
$ efetch -db taxonomy -id 10090 -format xml | xtract -Pattern Taxon -first TaxId ScientificName GenbankCommonName Division
Unable to locate xtract executable. Please execute the following:
ftp-cp ftp.ncbi.nlm.nih.gov /entrez/entrezdirect xtract.Linux.gz gunzip -f xtract.Linux.gz chmod +x xtract.Linux
I tried to do this, but i still the same.
I hope what I have requested is possible.