Question: Looking for publicly available dataset.
0
gravatar for KVC_bioinfo
3 months ago by
KVC_bioinfo300
WA, USA
KVC_bioinfo300 wrote:

Hello All,

I am trying to find a gene expression dataset which is publicly available? I am looking for gene counts coming from HTSeq like tools for different genes. This is not specific to any genes. It can be from human/mouse. I want the dataset only to test few statistical tests.

The purpose of this is for use in a project at University.

Could someone help me suggesting sources for such datasets?

Thanks!

public dataset • 239 views
ADD COMMENTlink modified 3 months ago by mark.ziemann1.0k • written 3 months ago by KVC_bioinfo300
1

Have a look at the recount2 R package, lot's of data readily available.

ADD REPLYlink written 3 months ago by WouterDeCoster26k
1

ArrayExpress has number of processed data and filtering option may show dataset you are looking for.

ADD REPLYlink modified 3 months ago • written 3 months ago by rice.researcher80

Thank you so much. I will look into it.

ADD REPLYlink modified 3 months ago • written 3 months ago by KVC_bioinfo300

No. But I will definitely look into it.

ADD REPLYlink written 3 months ago by KVC_bioinfo300
3
gravatar for mark.ziemann
3 months ago by
mark.ziemann1.0k
Australia/Mebourne/Monash University
mark.ziemann1.0k wrote:

2 good options:

recount2 https://jhubiostatistics.shinyapps.io/recount/

ARCHS4 http://amp.pharm.mssm.edu/archs4/

Also many GEO series include count matrices although these are generated by various pipelines.

ADD COMMENTlink modified 3 months ago • written 3 months ago by mark.ziemann1.0k
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