Question: uniprot embl Ncbi
0
gravatar for h.elshqnqery
19 months ago by
h.elshqnqery0 wrote:

iam new in the field, how can i download data from uniprot EMBL NCBI plast? thank u

software error • 648 views
ADD COMMENTlink modified 19 months ago by LLTommy1.2k • written 19 months ago by h.elshqnqery0

In general these sites will have corresponding FTP locations where you can download data. For Uniprot and for NCBI Blast (which is what you wanted I suppose).

ADD REPLYlink written 19 months ago by genomax68k
2
gravatar for skbrimer
19 months ago by
skbrimer530
United States
skbrimer530 wrote:

Not to be mean, however this is a really poor question and the answers, if you get them at all, will most likely be very unhelpful. However to at least point you in a direction. In general they all have ftp sites for bulk downloads or a link to download (in whatever format you need) next to the file you are looking at.

For more information here is the link for uniprot's help page http://www.uniprot.org/help/ and here is a video on youtube

Ensemble's downloads page with examples http://www.ensembl.org/downloads.html also their general help http://www.ensembl.org/info/website/index.html

ncbi is just as easy, if you are looking for a programmatic way of download here you go

ADD COMMENTlink written 19 months ago by skbrimer530
1

Oh! I completely overlooked the best help for beginners. You can read the Biostars handbook which includes a section on where and how to get data https://www.biostarhandbook.com/data/where-to-get-data.html

ADD REPLYlink written 19 months ago by skbrimer530
1

That link requires a purchase to access. You should make a note of that when recommending Biostar handbook.

ADD REPLYlink written 19 months ago by genomax68k

Good point. I forgot that. It is a good manual though. I feel it was well worth the money.

ADD REPLYlink written 19 months ago by skbrimer530
0
gravatar for LLTommy
19 months ago by
LLTommy1.2k
LLTommy1.2k wrote:

The answer to that vague question is... at the respective websites. If you want a more concrete answer you have to ask a more concrete question, sorry.

And what should ncbi plast be (I guess you mean 'blast' but see, you gotta be more precise - if you don't know how to spell blast, I wonder what you want to do with all the data for... all species?)? Bioinformatics is complex and a huge field. And why does this have the tag 'software error'?

ADD COMMENTlink written 19 months ago by LLTommy1.2k
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