Question: uniprot embl Ncbi
0
gravatar for h.elshqnqery
8 days ago by
h.elshqnqery0 wrote:

iam new in the field, how can i download data from uniprot EMBL NCBI plast? thank u

software error • 137 views
ADD COMMENTlink modified 8 days ago by LLTommy1.1k • written 8 days ago by h.elshqnqery0

In general these sites will have corresponding FTP locations where you can download data. For Uniprot and for NCBI Blast (which is what you wanted I suppose).

ADD REPLYlink written 8 days ago by genomax37k
2
gravatar for skbrimer
8 days ago by
skbrimer430
United States
skbrimer430 wrote:

Not to be mean, however this is a really poor question and the answers, if you get them at all, will most likely be very unhelpful. However to at least point you in a direction. In general they all have ftp sites for bulk downloads or a link to download (in whatever format you need) next to the file you are looking at.

For more information here is the link for uniprot's help page http://www.uniprot.org/help/ and here is a video on youtube

Ensemble's downloads page with examples http://www.ensembl.org/downloads.html also their general help http://www.ensembl.org/info/website/index.html

ncbi is just as easy, if you are looking for a programmatic way of download here you go

ADD COMMENTlink written 8 days ago by skbrimer430
1

Oh! I completely overlooked the best help for beginners. You can read the Biostars handbook which includes a section on where and how to get data https://www.biostarhandbook.com/data/where-to-get-data.html

ADD REPLYlink written 8 days ago by skbrimer430
1

That link requires a purchase to access. You should make a note of that when recommending Biostar handbook.

ADD REPLYlink written 8 days ago by genomax37k

Good point. I forgot that. It is a good manual though. I feel it was well worth the money.

ADD REPLYlink written 8 days ago by skbrimer430
0
gravatar for LLTommy
8 days ago by
LLTommy1.1k
LLTommy1.1k wrote:

The answer to that vague question is... at the respective websites. If you want a more concrete answer you have to ask a more concrete question, sorry.

And what should ncbi plast be (I guess you mean 'blast' but see, you gotta be more precise - if you don't know how to spell blast, I wonder what you want to do with all the data for... all species?)? Bioinformatics is complex and a huge field. And why does this have the tag 'software error'?

ADD COMMENTlink written 8 days ago by LLTommy1.1k
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