How to convert a .gbff to the .gbk using batch method (to do it computationally for several bacteria)

Question

[natasha.sernova]

Dear all,

where can I get environmental bacteria genome in fasta format (as many as possible)?

From the post above I know how to reach .gbff-files of all bacteria. When I unzip any genomic.gbff.gz file, I get genomic.gbff file. But it is multilocus file. Uniprot Ugene makes it single locus .gbk file, suitable for any software. But how to do it for 50 bacteria? Thank you!

[GenoMax]

Can you not use a loop to loop through all the files?

[natasha.sernova]

Thank you very much, it's a good idea!

[ab555]

hey! how did you use Ugene to convert .gbff to .gbk? I'm unable to operate Ugene well so it would be amazing if you could tell me the procedure :)