Question: Stringtie output for DGE
0
gravatar for amy16
2.2 years ago by
amy1640
amy1640 wrote:

I've coverage tables generated with StringTie using only the -B option. Can this be used as an input for Ballgown for DGE? PS: I haven't used the -e option.

ballgown stringtie • 714 views
ADD COMMENTlink modified 8 weeks ago by Biostar ♦♦ 20 • written 2.2 years ago by amy1640
1

-B option is to output for downstream ballgown analysis. Look at your output. If the output from StringTie resulted in .ctab files, then, i guess, you are good to go.

ADD REPLYlink written 2.2 years ago by cpad011212k

Yes, I have the ctab files as the output. So does the option -e mean only for transcript annotated in the reference genome?

ADD REPLYlink written 2.2 years ago by amy1640
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