Entering edit mode
6.3 years ago
prideda0
▴
10
I'm trying to use ASCAT to assess CNV from Illumina Hiseq whole exome data.
Don't have reliable access to a windows computer at the moment, so I haven't been able to use genomestudio to determine BAF and LRR.
I'm pretty new to data analysis and am having a hard time figuring out which packages I need to use to pre-process the WES data for ASCAT.
Any recommendations for packages to use / a general pipeline for pre-processing the WES data for ASCAT?
Thanks