Question: Preprocess Illumina Hiseq Exome for ASCAT
1
gravatar for prideda0
2.7 years ago by
prideda010
prideda010 wrote:

I'm trying to use ASCAT to assess CNV from Illumina Hiseq whole exome data.

Don't have reliable access to a windows computer at the moment, so I haven't been able to use genomestudio to determine BAF and LRR.

I'm pretty new to data analysis and am having a hard time figuring out which packages I need to use to pre-process the WES data for ASCAT.

Any recommendations for packages to use / a general pipeline for pre-processing the WES data for ASCAT?

Thanks

ADD COMMENTlink modified 2.6 years ago by Biostar ♦♦ 20 • written 2.7 years ago by prideda010
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 898 users visited in the last hour