I am trying to enrich GO terms related to DEGs of two phenotype's brain transcriptome and show them in a REVIGO TreeMap.
1- according to my research design, which REVIGO Semantic Similarity method is better?
2- I already have tried all 4 of them to see what visual differences their results have.
Resnik, Lin and SimRel shown about 10 different bunch of colourful squares for different biological processes,
but Jiang & Conarth shown only 4
In this situation, which is better: a crowded TreeMap containing more colour and more square OR one with less squares and limited colours ?