for transcript analysis, STAR or Hisat ?

Question

[XBria]

Hi,

Which aligner to use ? and what is the reason ?

Could you share a link to an article that compares them ?

Answer 1

[GenoMax]

Here you go.

[XBria]

This is exactly what I was looking for !

Thank you very Much !

[XBria]

Dear genomax,

Could you please also share some links to the papers in which STAR gives better results than Hisat ?

Thanks in advance