I am using a VCF Tools for SNPs filtering. I need to count (or extract) a variable which have 100% missing genotypes (I have multisample VCF).
In VCF I know a command --max.missing, but I can define only a max missing, without a min number.
It is important for me, because I have 1 big VCF with 8 breeds' SNP's, and I would like to get information, how many SNP's are exactly in each breeds.
Thank you in advance!