thanks in advance
how to find somatic variant with single bam file by samtools ?
hii i have one bam file and i want to call somatic variant by samtools. what will be command ?
Here is the workflow suggested by the samtools folks for variant calling. You'll note that this is not specifically for somatic variant calls, since the samtools suite is a more generic variant caller.
but is there any open source somatic caller ?
FreeBayes and mutect come to mind.
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy