Question: Please help me, 'error encountered internal bowtie 2 exception (#1)'
0
gravatar for samnatha1108
17 months ago by
samnatha11080 wrote:

Hi, everyone. I have some problem.. :(

/usr/bin/bowtie2-align-s --wrapper basic-0 -x chr8.fa -S bowtie2.sam ExomeSeq_1.fastq.gz ExomeSeq_2.fastq.gz Extra parameter(s) specified: "ExomeSeq_2.fastq.gz" Error: Encountered internal Bowtie 2 exception (#1) Command: /usr/bin/bowtie2-align-s --wrapper basic-0 -x chr8.fa -S bowtie2.sam ExomeSeq_1.fastq.gz ExomeSeq_2.fastq.gz

what's the problem? and what mean 'Encountered internal Bowtie 2 exception (#1)' ??

Thank you for read.

bowtie2 alignment assembly genome • 1.1k views
ADD COMMENTlink modified 17 months ago by Devon Ryan89k • written 17 months ago by samnatha11080
1
gravatar for Devon Ryan
17 months ago by
Devon Ryan89k
Freiburg, Germany
Devon Ryan89k wrote:

You probably meant bowtie2 -x chr8.fa -S bowtie2.sam -1 ExomeSeq_1.fastq.gz -2 ExomeSeq_2.fastq.gz or something like that. An "internal exception" is an error internal to the program.

ADD COMMENTlink written 17 months ago by Devon Ryan89k

thank you for help me..!!

ADD REPLYlink written 17 months ago by samnatha11080
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