Question: Please help me, 'error encountered internal bowtie 2 exception (#1)'
0
gravatar for samnatha1108
2.3 years ago by
samnatha11080 wrote:

Hi, everyone. I have some problem.. :(

/usr/bin/bowtie2-align-s --wrapper basic-0 -x chr8.fa -S bowtie2.sam ExomeSeq_1.fastq.gz ExomeSeq_2.fastq.gz Extra parameter(s) specified: "ExomeSeq_2.fastq.gz" Error: Encountered internal Bowtie 2 exception (#1) Command: /usr/bin/bowtie2-align-s --wrapper basic-0 -x chr8.fa -S bowtie2.sam ExomeSeq_1.fastq.gz ExomeSeq_2.fastq.gz

what's the problem? and what mean 'Encountered internal Bowtie 2 exception (#1)' ??

Thank you for read.

bowtie2 alignment assembly genome • 1.6k views
ADD COMMENTlink modified 2.3 years ago by Devon Ryan94k • written 2.3 years ago by samnatha11080
1
gravatar for Devon Ryan
2.3 years ago by
Devon Ryan94k
Freiburg, Germany
Devon Ryan94k wrote:

You probably meant bowtie2 -x chr8.fa -S bowtie2.sam -1 ExomeSeq_1.fastq.gz -2 ExomeSeq_2.fastq.gz or something like that. An "internal exception" is an error internal to the program.

ADD COMMENTlink written 2.3 years ago by Devon Ryan94k

thank you for help me..!!

ADD REPLYlink written 2.3 years ago by samnatha11080
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