Hi, I'm a newbie at analysing ChIP-seq and I have some question.
I want to draw a picture which shows tag density as the number of tags per 100bp for example. And these tag density drawn form the centre of each 'some specific TF' binding site. I tried to find out very hard but failed. Maybe because of my poor English...
How can I draw a picture like log2(enrichment over input)??Like, may I use the value 'pileup' from the MACS2 output??
Maybe these questions are silly for the experts... This is my first time using "Biostar" board and if I wrote something wrong or did something wrong, please let me know.
Any advises or example methods will be a great help.. Please help me out a little.
Thank you. Best, Woongjae