Hello all again, i was using cuffdiff (the last step) thus far to do rna-seq analysis but as i ve read and been told cuffdiff is outdated and now i have been using deseq2 ( i got no idea of R but with the help of this link : https://dwheelerau.com/2014/02/17/how-to-use-deseq2-to-analyse-rnaseq-data/ i was able to achieve something ). Results from cuffdiff also had basemeanA basemeanB ( two conditions or two samples ) but deseq2 just gives 1. Can someone tell me the code in R to add so i can get the basemean for each sample/condition ?
Question: rna seq - deseq2
2.3 years ago by
dimitrischat • 110
dimitrischat • 110 wrote:
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