Question: What is the algorithm used by UCSC lift over tool?
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gravatar for manojkumar_bhosale
2.6 years ago by
manojkumar_bhosale70 wrote:

I want to write my own tool for liftover between two genome assemblies. Please let me know how the chain file is used to convert the coordinates?

sequencing alignment assembly • 976 views
ADD COMMENTlink written 2.6 years ago by manojkumar_bhosale70
2

Chains/nets are explained here. Additional practical information on this page.

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by genomax85k
1

You can read CrossMap algorithm description, and even better, examine its source.

ADD REPLYlink written 2.6 years ago by h.mon30k
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