Software to predict peptide time-of-flight

Question

[samuelmiver]

I am working with some Mass Spectrometry data comparing expected versus observed outcome. I was looking at the moment for a program to predict which is going to be the time-of-flight of a specific peptide based on its charge/mass; however, I have not been able to find any option at the literature.

Do you know any option?

Thanks in advance.

Answer 1

[samuelmiver]

At the end I used this webservice:

http://software.broadinstitute.org/cancer/software/genepattern/esppredictor

'The ESPPredictor module implements the enhanced signature peptide (ESP) predictor method developed by Fusaro et al. (2009). It provides a means of predicting, from sequence alone, which peptides for any given protein are likely to work well for targeted mass spec assay development.'