Question: HOMER find motifs for each sequence
0
gravatar for bsharmi6
2.5 years ago by
bsharmi620
bsharmi620 wrote:

Hello,

I am running HOMER to find known motif enrichment on differentially methylated regions (DMR). The target consists of fasta sequences corresponding to DMR and I have also provided a background file. I can run the commands fine.

But I was wondering if I can get the intermediate output from HOMER where all potential motifs for each sequence in the fasta file is provided. Right now I can see the # Target sequences with a particular motif, but these are only the significant ones. Is there a way I can get all sequences for a motif, irrespective of being significant or not?

Thank you, Sharmi

sequence • 1.2k views
ADD COMMENTlink written 2.5 years ago by bsharmi620
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1625 users visited in the last hour